A user-friendly nano-CT image alignment and 3D reconstruction platform based on LabVIEW

WANG Sheng-Hao; ZHANG Kai; WANG Zhi-Li; GAO Kun; WU Zhao; ZHU Pei-Ping; WU Zi-Yu

doi:10.1088/1674-1137/39/1/018001

Chinese Physics C> 2015, Vol. 39> Issue(1) : 018001 DOI: 10.1088/1674-1137/39/1/018001

A user-friendly nano-CT image alignment and 3D reconstruction platform based on LabVIEW

Abstract
HTML
Reference
Related

PDF

Abstract：
X-ray computed tomography at the nanometer scale (nano-CT) offers a wide range of applications in scientific and industrial areas. Here we describe a reliable, user-friendly, and fast software package based on LabVIEW that may allow us to perform all procedures after the acquisition of raw projection images in order to obtain the inner structure of the investigated sample. A suitable image alignment process to address misalignment problems among image series due to mechanical manufacturing errors, thermal expansion, and other external factors has been considered, together with a novel fast parallel beam 3D reconstruction procedure that was developed ad hoc to perform the tomographic reconstruction. We have obtained remarkably improved reconstruction results at the Beijing Synchrotron Radiation Facility after the image calibration, the fundamental role of this image alignment procedure was confirmed, which minimizes the unwanted blurs and additional streaking artifacts that are always present in reconstructed slices. Moreover, this nano-CT image alignment and its associated 3D reconstruction procedure are fully based on LabVIEW routines, significantly reducing the data post-processing cycle, thus making the activity of the users faster and easier during experimental runs.

References

[1]

Alt V, Kgelmaier D V, Lips K S et al. Acta. Biomater, 2011, 7: 3773[2] Schneider P, Stauber M, Voide R et al. J. Bone. Miner. Res., 2007, 22: 1557[3] Shearing P, Bradley R, Gelb J et al. Electrochem. Solid. St. B, 2011, 14: 117[4] YUAN Qing-Xi, ZHANG Kai, HONG You-Li et al. J. Synchrotron Radiat., 2012, 19: 1021[5] Dierick M, Masschaele B, Hoorebeke L V. Meas. Sci. Technol., 2004, 15: 1366[6] BI Kun, LIU Qian, LV Xiao-Hua et al. J. X-Ray Sci. Technol., 2008, 16: 261[7] Dierick M, Loo D V, Masschaele B et al. J. X-ray Sci. Technol., 2010, 18: 451[8] Keleshis C, Ionita C, Yadava G et al. Proc. SPIE, 2008, 6913: 69135A[9] WANG Jun-Yue, ZHU Pei-Ping, YUAN Qing-Xi et al. Radiat. Phys. Chem., 2006, 75: 1986[10] YUAN Yu, LI Cong-Ming, LI Bao-Liang. Adv. Mater. Res., 2012, 393: 471[11] ZHANG Hui, GAO Ling, LIU Jing et al. Appl. Mech. Mater., 2013, 263: 2515[12] Pérez A, Gonzalez R C. IEEE. T. Pattern. Anal., 1987, 9: 742

[1]	Xiao-Yue Gu , Wei Zhou , Lin Li , Long Wei , Peng-Fei Yin , Lei-Min Shang , Ming-Kai Yun , Zhen-Rui Lu , Xian-Chao Huang . High resolution image reconstruction method for a double-plane PET system with changeable spacing. Chinese Physics C, 2016, 40(5): 058201. doi: 10.1088/1674-1137/40/5/058201
[2]	NIU Li-Bo , LI Yu-Lan , HUANG Meng , FU Jian-Qiang , HE Bin , LI Yuan-Jing . Adaptive multitrack reconstruction for particle trajectories based on fuzzy c-regression models. Chinese Physics C, 2015, 39(3): 036201. doi: 10.1088/1674-1137/39/3/036201
[3]	ZHANG Jin-Zhao , TUO Xian-Guo . Geometric matrix research for nuclear waste drum tomographic gamma scanning transmission image reconstruction. Chinese Physics C, 2015, 39(6): 068202. doi: 10.1088/1674-1137/39/6/068202
[4]	CHEN Tian-Xiang , LI Cheng , SUN Yong-Jie , CHEN Hong-Fang , SHAO Ming , TANG Ze-Bo , YANG Rong-Xing , ZHOU Yi , ZHANG Yi-Fei . A cosmic ray test platform based on high time resolution MRPC technology. Chinese Physics C, 2015, 39(5): 056003. doi: 10.1088/1674-1137/39/5/056003
[5]	ZHANG Hua , HUANG Kui-Dong , SHI Yi-Kai , XU Zhe . Point spread function modeling and image restoration for cone-beam CT. Chinese Physics C, 2015, 39(3): 038202. doi: 10.1088/1674-1137/39/3/038202
[6]	YANG Min , WANG Xiao-Long , LIU Yi-Peng , MENG Fan-Yong , LI Xing-Dong , LIU Wen-Li , WEI Dong-Bo . Automatic calibration method of voxel size for cone-beam 3D-CT scanning system. Chinese Physics C, 2014, 38(4): 046202. doi: 10.1088/1674-1137/38/4/046202
[7]	LI Chao , ZHANG Zhi-Lei , QI Xin , XU Xian-Bo , HE Yuan , YANG Lei . Beam dynamics study of RFQ for CADS with a 3D space-charge-effect. Chinese Physics C, 2014, 38(3): 037005. doi: 10.1088/1674-1137/38/3/037005
[8]	NIU Li-Bo , LI Yu-Lan , HUANG Meng , HE Bin , LI Yuan-Jing . Track reconstruction based on Hough-transform for nTPC. Chinese Physics C, 2014, 38(12): 126201. doi: 10.1088/1674-1137/38/12/126201
[9]	ZHOU Xiao-Lin , YUN Ming-Kai , CAO Xue-Xiang , LIU Shuang-Quan , WANG Lu , HUANG Xian-Chao , WEI Long . Evaluation of imaging protocol for ECT based on CS image reconstruction algorithm. Chinese Physics C, 2014, 38(4): 048201. doi: 10.1088/1674-1137/38/4/048201
[10]	LIANG Mai-Lin , ZHANG Ya-Bin , YANG Rui-Lin , ZHANG Fu-Lin . Dirac equation with a magnetic field in 3D non-commutative phase space. Chinese Physics C, 2013, 37(6): 063106. doi: 10.1088/1674-1137/37/6/063106
[11]	ZHAO Ya-Liang , FU Shi-Nian , LI Zhi-Hui , XU Cheng-Hai , YANG Xiao-Yu . 3D space charge code with the FFT method. Chinese Physics C, 2013, 37(3): 037004. doi: 10.1088/1674-1137/37/3/037004
[12]	LÜ Jian-Qin . Transport of 3D space charge dominated beams. Chinese Physics C, 2013, 37(10): 107001. doi: 10.1088/1674-1137/37/10/107001
[13]	XU Min , HE Kang-Lin , ZHANG Zi-Ping , WANG Yi-Fang , BIAN Jian-Ming , FU Cheng-Dong , HUANG Bin , JI Xiao-Bin , SUN Sheng-Sen , YAN Liang , ZHANG Jian-Yong . Primary vertex reconstruction based on the Kalman filter technique at BESⅢ. Chinese Physics C, 2010, 34(1): 92-98. doi: 10.1088/1674-1137/34/1/017
[14]	GUO Jun-Jun , WANG Xiao-Lian , TANG Hao-Hui , ZHAO Yan-E , XU Zi-Zong . 3D simulation of micromegas detector performance. Chinese Physics C, 2010, 34(4): 482-486. doi: 10.1088/1674-1137/34/4/012
[15]	YUN Ming-Kai , LIU Shuang-Quan , SHAN Bao-Ci , WEI Long . An advanced fully 3D OSEM reconstruction for positron emission tomography. Chinese Physics C, 2010, 34(2): 231-236. doi: 10.1088/1674-1137/34/2/015
[16]	XU Min , HE Kang-Lin , ZHANG Zi-Ping , WANG Yi-Fang . Decay vertex reconstruction and 3-dimensional lifetime determination at BESⅢ. Chinese Physics C, 2009, 33(6): 428-435. doi: 10.1088/1674-1137/33/6/005
[17]	ZHANG Man-Zhou , LI Hao-Hu , JIANG Bo-Cheng , LIU Gui-Min , LI De-Ming . Beam based alignment of the SSRF storage ring. Chinese Physics C, 2009, 33(4): 301-305. doi: 10.1088/1674-1137/33/4/013
[18]	ZUO Yi , ZHENG Yong-Nan , ZHOU Dong-Mei , YUAN Da-Qing , LIU Meng , FAN Ping , CUI Bao-Qun , MA Ying-Jun , LI Li-Qiang , LI Ji-Zhou , ZHU Sheng-Yun . PAC investigation of qudropole interaction in nano-soft magnetic material Fe_73.5Cu₁Nb₃Si_13.5B₉. Chinese Physics C, 2008, 32(S2): 259-261.
[19]	WU Wei , HE Yuan , MA Li-Zhen , LI Qing , YAO Qing-Gao , BIAN Wen-Long , XIA Jia-Wen . 3D Quench Simulation Using Finite Element Method for CR Superconducting Magnet's Strand. Chinese Physics C, 2008, 32(S1): 15-18.
[20]	YU Neng-Jie , TANG Chuan-Xiang , ZHENG Shu-Xin , LI Quan-Feng , GONG Ke . 2-D Beam Profile Measurement Based on CT Algorithm with Rotating Multi-Wire Target. Chinese Physics C, 2005, 29(4): 408-412.

Access

Get Citation

WANG Sheng-Hao, ZHANG Kai, WANG Zhi-Li, GAO Kun, WU Zhao, ZHU Pei-Ping and WU Zi-Yu. A user-friendly nano-CT image alignment and 3D reconstruction platform based on LabVIEW[J]. Chinese Physics C, 2015, 39(1): 018001. doi: 10.1088/1674-1137/39/1/018001

RIS(for EndNote,Reference Manager,ProCite)

BibTex

Txt

Milestone

Received: 2014-02-17
Revised: 2014-05-27

Article Metric

Article Views(2240)
PDF Downloads(272)
Cited by(0)

Policy on re-use

To reuse of subscription content published by CPC, the users need to request permission from CPC, unless the content was published under an Open Access license which automatically permits that type of reuse.

通讯作者: 陈斌, bchen63@163.com

1.
沈阳化工大学材料科学与工程学院沈阳 110142

A user-friendly nano-CT image alignment and 3D reconstruction platform based on LabVIEW

Corresponding author: ZHANG Kai,

Corresponding author: WU Zi-Yu,

Received Date: 2014-02-17

Accepted Date: 2014-05-27

Available Online: 2015-01-05

Abstract: X-ray computed tomography at the nanometer scale (nano-CT) offers a wide range of applications in scientific and industrial areas. Here we describe a reliable, user-friendly, and fast software package based on LabVIEW that may allow us to perform all procedures after the acquisition of raw projection images in order to obtain the inner structure of the investigated sample. A suitable image alignment process to address misalignment problems among image series due to mechanical manufacturing errors, thermal expansion, and other external factors has been considered, together with a novel fast parallel beam 3D reconstruction procedure that was developed ad hoc to perform the tomographic reconstruction. We have obtained remarkably improved reconstruction results at the Beijing Synchrotron Radiation Facility after the image calibration, the fundamental role of this image alignment procedure was confirmed, which minimizes the unwanted blurs and additional streaking artifacts that are always present in reconstructed slices. Moreover, this nano-CT image alignment and its associated 3D reconstruction procedure are fully based on LabVIEW routines, significantly reducing the data post-processing cycle, thus making the activity of the users faster and easier during experimental runs.

HTML

Reference (1)

A user-friendly nano-CT image alignment and 3D reconstruction platform based on LabVIEW

Abstract：

References

Access

Article Metrics

Metrics

通讯作者: 陈斌, bchen63@163.com

Email This Article