DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction

ZHANG Kai; YUAN Qing-Xi; HUANG Wan-Xia; ZHU Pei-Ping; WU Zi-Yu

doi:10.1088/1674-1137/38/10/106202

Chinese Physics C> 2014, Vol. 38> Issue(10) : 106202 DOI: 10.1088/1674-1137/38/10/106202

DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction

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Abstract：
Diffraction enhanced imaging (DEI) has been widely applied in many fields, especially when imaging low-Z samples or when the difference in the attenuation coefficient between different regions in the sample is too small to be detected. Recent developments of this technique have presented a need for a new software package for data analysis. Here, the Diffraction Enhanced Image Reconstructor (DEIReconstructor), developed in Matlab, is presented. DEIReconstructor has a user-friendly graphical user interface and runs under any of the 32-bit or 64-bit Microsoft Windows operating systems including XP and Win7. Many of its features are integrated to support imaging preprocessing, extract absorption, refractive and scattering information of diffraction enhanced imaging and allow for parallel-beam tomography reconstruction for DEI-CT. Furthermore, many other useful functions are also implemented in order to simplify the data analysis and the presentation of results. The compiled software package is freely available.

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[1]

Dilmanian F et al. Phys. Med. Biol., 2000, 45: 933[2] Wilkins S et al. Nature, 1996, 384: 335[3] Chapman D et al. Synchrotron Radiation News, 1998, 11: 4[4] Momose A, Kawamoto S. Jpn. J. Appl. Phys., 2006, 45: 314[5] Pavlov K et al. J. Phys. D: Appl. Phys., 2001, 34: 168[6] ZHU P et al. J. Phys. D: Appl. Phys., 2006, 39: 4142[7] ZHU P et al. PNAS, 2010, 107: 13576[8] ZHANG K et al. Phys. Med. Biol., 2008, 53: 5757[9] CHEN R C et al. J. Synchrotron. Radiat, 2012, 19: 836[10] Chapman D et al. Phys. Med. Biol., 1997, 42: 2015[11] ZHANG K et al. Anal. Bioanal. Chem., 2010, 397: 2067[12] ZHU P P et al. Appl. Phys. Lett., 2005, 87: 264101[13] Maksimenko A et al. Appl. Phys. Lett., 2005. 86: 1241051[14] ZHANG X et al. Phys. Med. Biol., 2008, 53: 5735[15] WANG M et al. J. Phys. D: Appl. Phys., 2007, 40: 6917[16] WANG J et al. Phys. Med. Biol., 2006, 51: 3391[17] HUANG Z et al. Appl. Phys. Lett., 2006, 89: 041124[18] SUN Y et al. Computerized Tomography Based on X-ray Refraction Information. In Biomedical Imaging: Nano to Macro, 2006. 3rd IEEE International Symposium on. 2006. 1022[19] Oltulu O et al. J. Phys. D: Appl. Phys., 2003, 17: 2152

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ZHANG Kai, YUAN Qing-Xi, HUANG Wan-Xia, ZHU Pei-Ping and WU Zi-Yu. DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction[J]. Chinese Physics C, 2014, 38(10): 106202. doi: 10.1088/1674-1137/38/10/106202

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Received: 2013-11-15
Revised: 2014-03-26

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通讯作者: 陈斌, bchen63@163.com

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沈阳化工大学材料科学与工程学院沈阳 110142

DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction

Corresponding author: ZHU Pei-Ping,

Corresponding author: WU Zi-Yu,

Received Date: 2013-11-15

Accepted Date: 2014-03-26

Available Online: 2014-10-05

Abstract: Diffraction enhanced imaging (DEI) has been widely applied in many fields, especially when imaging low-Z samples or when the difference in the attenuation coefficient between different regions in the sample is too small to be detected. Recent developments of this technique have presented a need for a new software package for data analysis. Here, the Diffraction Enhanced Image Reconstructor (DEIReconstructor), developed in Matlab, is presented. DEIReconstructor has a user-friendly graphical user interface and runs under any of the 32-bit or 64-bit Microsoft Windows operating systems including XP and Win7. Many of its features are integrated to support imaging preprocessing, extract absorption, refractive and scattering information of diffraction enhanced imaging and allow for parallel-beam tomography reconstruction for DEI-CT. Furthermore, many other useful functions are also implemented in order to simplify the data analysis and the presentation of results. The compiled software package is freely available.

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DEIReconstructor: a software for diffraction enhanced imaging processing and tomography reconstruction

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